GRAFIMO v1.1.4
:: DESCRIPTION
GRAFIMO is a command-line tool that extends the traditional Position Weight Matrix (PWM) scanning procedure to VGs.
::DEVELOPER
:: SCREENSHOTS
N/a
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Tognon M, Bonnici V, Garrison E, Giugno R, Pinello L.
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
PLoS Comput Biol. 2021 Sep 27;17(9):e1009444. doi: 10.1371/journal.pcbi.1009444. PMID: 34570769; PMCID: PMC8519448.