GRAFIMO v1.1.4 – GRAph-based Finding of Individual Motif Occurrences

GRAFIMO v1.1.4

:: DESCRIPTION

GRAFIMO is a command-line tool that extends the traditional Position Weight Matrix (PWM) scanning procedure to VGs.

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::DEVELOPER

Pinello Lab.

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

GRAFIMO

:: MORE INFORMATION

Citation

Tognon M, Bonnici V, Garrison E, Giugno R, Pinello L.
GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
PLoS Comput Biol. 2021 Sep 27;17(9):e1009444. doi: 10.1371/journal.pcbi.1009444. PMID: 34570769; PMCID: PMC8519448.

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