GMD 0.3.3
:: DESCRIPTION
GMD is an R package to assess the similarity between spatial distributions of read-based sequencing data such as ChIP-seq and RNA-seq. GMD calculates the optimal distance between pairs of normalized signal distributions, optionally sliding one distribution over the other to ‘align’ the distributions. GMD also provides graphical and downstream clustering tools.
::DEVELOPER
Xiaobei Zhao <xiaobei at binf.ku.dk>, Albin Sandelin@The Bioinformatics Centre , University of Copenhagen
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/ MacOsX/ Windows
- R package
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Xiaobei Zhao and Albin Sandelin
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads
Bioinformatics (2012) 28 (8): 1164-1165.