OMIGA 1.0
:: DESCRIPTION
OMIGA is a pipeline for predicting protein-coding genes from insect genomes
::DEVELOPER
Li Lab: Insect Genomic and Bioinformatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Perl
- mysql(version 5.1 or later versions)
– abyss(version 1.3.5 or later versions)
– cegma(version 2.4.0 or later versions)
– RepeatModeler(version 1.0.5 or later versions)
– RepeatMasker(version 3.3.0 or later versions)
– tophat(version 2.0.6 or later versions)
– Cufflinks(version 2.0.2 or later versions)
– Augustus(version 2.6.1 or later versions)
– SNAP(version 2006-07-28 or later versions)
– GeneMark-es(version 2.3 or later versions)
– Maker(version 2.26 or later versions)
– Interproscan(version 4.8 or later versions)
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mol Genet Genomics. 2014 Aug;289(4):567-73. doi: 10.1007/s00438-014-0831-7. Epub 2014 Mar 9.
OMIGA: Optimized Maker-Based Insect Genome Annotation.
Liu J1, Xiao H, Huang S, Li F.