Tag: Metabolic Pathways

CAMPways – Constrained Alignment of Metabolic Pathways

CAMPways

:: DESCRIPTION

CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways.

::DEVELOPER

Cesim Erten, Computer Engineering, Kadir Has University, Istanbul, Turkey

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 CAMPways

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jul 1;29(13):i145-53. doi: 10.1093/bioinformatics/btt235.
CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways.
Abaka G1, BBıyıkoğlu T, Erten C.

FROMP 20130424 – Fragment Recruitment on Metabolic Pathways

FROMP 20130424

:: DESCRIPTION

FROMP (Fragment Recruitment on Metabolic Pathways) is a software for mapping and visualizing enzyme annotations onto the Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways or custom-made pathways and comparing the samples in terms of their Pathway Completeness Scores, their relative Activity Scores or enzyme enrichment odds ratios.

:: DEVELOPER

Dhwani Desai

:: SCREENSHOTS

FROMP

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

 FROMP

:: MORE INFORMATION

Citation

Fragment recruitment on metabolic pathways: comparative metabolic profiling of metagenomes and metatranscriptomes.
Desai DK, Schunck H, Löser JW, Laroche J.
Bioinformatics. 2013 Mar 15;29(6):790-791. Epub 2013 Jan 9.