GDLS 1.11 – Genetic Design through Local Search

GDLS 1.11

:: DESCRIPTION

GDLS is a computational design tool for metabolic engineering. GDLS uses an efficient, low-complexity local search approach to identify favorable genetic designs from flux-balance metabolic models.

::DEVELOPER

Desmond Lun

:: SCREENSHOTS

N/a

::REQUIREMENTS

  • Linux / Windows/ MacOsX
  • MatLab

:: DOWNLOAD

 GDLS

:: MORE INFORMATION

Citation

Mol Syst Biol. 2009;5:296. doi: 10.1038/msb.2009.57. Epub 2009 Aug 18.
Large-scale identification of genetic design strategies using local search.
Lun DS1, Rockwell G, Guido NJ, Baym M, Kelner JA, Berger B, Galagan JE, Church GM.

GDBB 1.01 – Genetic Design through Branch and Bound

GDBB 1.01

:: DESCRIPTION

GDBB is a computational design tool for metabolic engineering. GDBB uses an efficient truncated branch and bound approach to identify favorable genetic designs from flux-balance metabolic models.

::DEVELOPER

Desmond Lun

:: SCREENSHOTS

N/a

::REQUIREMENTS

  • Linux / Windows/ MacOsX
  • MatLab

:: DOWNLOAD

  GDBB

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Jun 15;28(12):1619-23. doi: 10.1093/bioinformatics/bts255. Epub 2012 Apr 28.
Truncated branch and bound achieves efficient constraint-based genetic design.
Egen D1, Lun DS.