Tag: Gene Expression Analysis

ScoreGene 1.0 – A Gene Expression Data Analysis toolkit

ScoreGene 1.0

:: DESCRIPTION

ScoreGenes is a data analysis toolkit designed for large sets of gene expressions over various experiments. ScoreGenes includes methods for evaluating data sets, discovering informative genes that are differentially expressed across the classes, classifying the experiments using supervised learning algorithms, and clustering the genes using semi-supervised learning method. This toolkit efficiently handles large data sets.

::DEVELOPER

Nir Friedman’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

 ScoreGene

:: MORE INFORMATION

Guide 1.2 – Application for Gene Expression analysis

Guide 1.2

:: DESCRIPTION

Guide (Genome Informatics Data Explorer) is a desktop application designed for the bench biologists to analyse RNA-Seq and microarray expression data. It performs gene-centric analyses such as differential expression and pathways using well-established R modules. It also integrates useful data from multiple sources, such as gene annotation and orthologue data, and enables editing of R commands to customise the analyses for advanced users.

:: DEVELOPER

Jarny Choi

:: SCREENSHOTS

Guide

:: REQUIREMENTS

:: DOWNLOAD

 Guide

:: MORE INFORMATION

Citation

BMC Genomics. 2013 Oct 7;14:688. doi: 10.1186/1471-2164-14-688.
Guide: a desktop application for analysing gene expression data.
Choi J