freeIbis
:: DESCRIPTION
freeIbis offers significant improvements in sequence accuracy owing to the use of a novel multiclass support vector machine (SVM) algorithm. Sequence quality scores are now calibrated based on empirically observed scores, thus providing a high correlation to their respective error rates. These improvements result in downstream advantages including improved genotyping accuracy.
::DEVELOPER
Department of Genetics / Bioinformatics Group, Max Planck Institute for Evolutionary Anthropology, Leipzig
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows / MacOsX / Linux
- Python
- C++ compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
Renaud G, Kircher M, Stenzel U and Kelso J.
freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.
Bioinformatics. 2013;doi:10.1093/bioinformatics/btt117