Tag: Free Energy

Renal Inner Medulla Free Energy Calculator

Renal Inner Medulla Free Energy Calculator

:: DESCRIPTION

The Renal Inner Medulla Free-Energy Calculator is a tool that allows the user to calculate steady-state mass balance and free-energy balance requirements for the renal inner medulla given a particular set of flows and concentrations in loops of Henle, collecting ducts, and vasa recta at the border between the inner and outer medulla of the mammalian kidney.

::DEVELOPER

Epithelial Systems Biology Laboratory

:: SCREENSHOTS

IMFEC

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • JRE

:: DOWNLOAD

Renal Inner Medulla Free-Energy Calculator

:: MORE INFORMATION

SAAMBE – Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations

SAAMBE

:: DESCRIPTION

SAAMBE (Single Amino Acid Mutation related change of Binding Energy) method addresses the demand for computational tools of predicting the effect of single amino acid substitution on the binding free energy of protein complexes. It is based on the fast (<< 1 minute) modified MM-PBSA protocol that is successfully tested and optimized for more than thousand experimental data points.

::DEVELOPER

Professor Emil Alexov Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

SAAMBE: Webserver to Predict the Charge of Binding Free Energy Caused by Amino Acids Mutations.
Petukh M, Dai L, Alexov E.
Int J Mol Sci. 2016 Apr 12;17(4). pii: E547.