G-effector – A Predictor on the Effector of Heterotrimeric G proteins

G-effector

:: DESCRIPTION

G-Effector is an online predictor, which outperforms BLAST, PSI-BLAST and HMMER on predicting the effectors of G proteins.

::DEVELOPER

Huaqin He’s Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Brief Bioinform. 2016 Mar 12. pii: bbw021.
Prediction and identification of the effectors of heterotrimeric G proteins in rice (Oryza sativa L.).
Li K, Xu C, Huang J, Liu W, Zhang L, Wan W, Tao H, Li L, Lin S, Harrison A, He H.

BPBAac – T3S effector prediction tool based on position-specific Amino Acid composition features in N-termini

BPBAac

:: DESCRIPTION

BPBAac, a classifier, was developed and trained using Support Vector Machine (SVM) based on the Aac feature extracted using a Bi-profile Bayes model.

::DEVELOPER

BioComputer, The Chinese University of Hong Kong

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows / MacOsX
  • R package

:: DOWNLOAD

 BPBAac

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Mar 15;27(6):777-84. doi: 10.1093/bioinformatics/btr021. Epub 2011 Jan 13.
High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles.
Wang Y, Zhang Q, Sun MA, Guo D.