SCYN – Single Cell CNV profiling method using Dynamic Programming

SCYN

:: DESCRIPTION

SCYN is a CNV (Copy number variation) segmentation method powered with dynamic programming. SCYN resolves the precise segmentation on in silico dataset.

::DEVELOPER

SCYN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

SCYN

:: MORE INFORMATION

Citation

Feng X, Chen L, Qing Y, Li R, Li C, Li SC.
SCYN: single cell CNV profiling method using dynamic programming.
BMC Genomics. 2021 Nov 16;22(Suppl 5):651. doi: 10.1186/s12864-021-07941-3. PMID: 34789142.

bellmansgap 20150520 – Dynamic Programming for Bioinformatics

bellmansgap 20150520

:: DESCRIPTION

Bellman’s GAP is a new programming system, designed to ease the development of bioinformatics tools based on the dynamic programming technique.

::DEVELOPER

Stefan Janssen , Dr. Georg Sauthoff

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 bellmansgap

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Mar 1;29(5):551-60. doi: 10.1093/bioinformatics/btt022. Epub 2013 Jan 25.
Bellman’s GAP–a language and compiler for dynamic programming in sequence analysis.
Sauthoff G1, Möhl M, Janssen S, Giegerich R.

SAP 1.1.3 – Pairwise Protein Structure Alignment via double Dynamic Programming

SAP 1.1.3

:: DESCRIPTION

SAP is a software of pairwise protein structure alignment via double dynamic programming.

::DEVELOPER

Willie Taylor

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SAP

:: MORE INFORMATION

Citation:

Taylor W.R.,
Protein structure comparison using SAP.
Methods Mol. Biol. 143 (2000) 19-32.