:: DESCRIPTION
SeqGL is a new group lasso-based algorithm to extract multiple transcription factor (TF) binding signals from ChIP- and DNase-seq profiles.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps.
Setty M, Leslie CS.
PLoS Comput Biol. 2015 May 27;11(5):e1004271. doi: 10.1371/journal.pcbi.1004271.
:: DESCRIPTION
BinDNase is a discriminative approach for transcription factor binding prediction using DNase I hypersensitivity data
::DEVELOPER
Computational systems biology group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BinDNase: A discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
Kähärä J, Lähdesmäki H.
Bioinformatics. 2015 May 7. pii: btv294.
:: DESCRIPTION
Wellington is a novel method for the accurate identification of digital genomic footprints from DNase-seq data.
pyDNase is an open-source software package which implements the Wellington algorithm to interface with DNase-seq data and expedite analyses.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2013 Nov;41(21):e201. doi: 10.1093/nar/gkt850. Epub 2013 Sep 25.
Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data.
Piper J1, Elze MC, Cauchy P, Cockerill PN, Bonifer C, Ott S.
