PSFM-DBT – Identifying DNA-binding Proteins

PSFM-DBT

:: DESCRIPTION

PSFM-DBT is a web server of identifying DNA-binding proteins by combing position specific frequency matrix and distance-bigram transformation

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Zhang J, Liu B.
PSFM-DBT: Identifying DNA-Binding Proteins by Combing Position Specific Frequency Matrix and Distance-Bigram Transformation.
Int J Mol Sci. 2017 Aug 25;18(9):1856. doi: 10.3390/ijms18091856. PMID: 28841194; PMCID: PMC5618505.

nDNA-prot – DNA-binding Proteins Identification

nDNA-prot

:: DESCRIPTION

nDNA-Prot is a new predictor which explored the practicality of modelling DNA binding identification and simultaneously employed an ensemble classifier.

::DEVELOPER

Dr. Zou quan

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2014 Sep 8;15:298. doi: 10.1186/1471-2105-15-298.
nDNA-prot: identification of DNA-binding proteins based on unbalanced classification.
Song L, Li D, Zeng X, Wu Y, Guo L1, Zou Q.

DBPnet v0.1.4 – Inferring cooperation of DNA Binding Proteins in 3D genome

DBPnet v0.1.4

:: DESCRIPTION

DBPnet – Inferring cooperation of DNA binding proteins in 3D genome.

::DEVELOPER

Wei Wang’s group

:: SCREENSHOTS

N/A

::REQUIREMENTS

Linux / MacOS

:: DOWNLOAD

DBPnet

:: MORE INFORMATION

Citation

Zhang K, Li N, Ainsworth RI, Wang W.
Systematic identification of protein combinations mediating chromatin looping.
Nat Commun. 2016 Jul 27;7:12249. doi: 10.1038/ncomms12249. PMID: 27461729; PMCID: PMC4974460.