AxParafit / AxPcoords – Highly optimized and Parallelized version of Parafit / DistPCoA

AxParafit / AxPcoords

:: DESCRIPTION

AxParafit and AxPcoords are highly optimized versions of Pierre Legendre’s Parafit and DistPCoA programs for statistical analysis of host-parasite coevolution. AxParafit has also been parallelized with MPI (Message Passing Interface) for compute clusters.

::DEVELOPER

the Exelixis Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX

:: DOWNLOAD

 AxParafit / AxPcoords

:: MORE INFORMATION

Citation

Alexandros Stamatakis, Alexander Auch, Jan Meier-Kolthoff, Markus Göker:
AxPcoords & Parallel AxParafit: Statistical Co-Phylogenetic Analyses on Thousands of Taxa”,
BMC Bioinformatics 8:405, 2007.

DistPCoA – Principal Coordinate Analysis with Correction for Negative Eigenvalues

DistPCoA

:: DESCRIPTION

DistPCoA performs Principal Coordinate Analysis (PCoA; Gower 1966) with the option of correcting for negative eigenvalues.

::DEVELOPER

Pierre Legendre

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • MacOsX / Windows

:: DOWNLOAD

 DistPCoA

:: MORE INFORMATION