Tag: Discrimination

DynaFace – Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions

DynaFace

:: DESCRIPTION

DynaFace predicts obligatory and non-obligatory interactions among a set of 300 putative protein complexes.

::DEVELOPER

Polymer Research Center

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser
:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics.
Soner S, Ozbek P, Garzon JI, Ben-Tal N, Haliloglu T.
PLoS Comput Biol. 2015 Oct 27;11(10):e1004461. doi: 10.1371/journal.pcbi.1004461.

SSEA-OMP – Outer Membrane Protein Discrimination

SSEA-OMP

:: DESCRIPTION

SSEA-OMP (Secondary Structure Element Alignment-based Outer Membrane Protein Discrimination system) is a web server for outer membrane protein discrimination.

::DEVELOPER

Ziding Zhang’s Lab, China Agricultural University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 SSEA-OMP

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2011 Mar 17;12:76. doi: 10.1186/1471-2105-12-76.
Outer membrane proteins can be simply identified using secondary structure element alignment.
Yan RX1, Chen Z, Zhang Z.