RISO – Motif Discovery Tool

RISO

:: DESCRIPTION

RISO is a software to extract conserved regions that occur in a well-ordered and regularly spaced manner in a set of DNA sequences.

RISO Online Version

::DEVELOPER

Alexandra M. Carvalho

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

RISO

:: MORE INFORMATION

Citation

Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira and Marie-France Sagot,
An efficient algorithm for the identification of structured motifs in DNA promoter sequences,
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 3(2):126-140, Apr-Jun, 2006.

RISOTTO – Motif Discovery Tool

RISOTTO

:: DESCRIPTION

RISOTTO, extracts (long) conserved regions that occur in a well-ordered and regularly spaced manner in a set of DNA sequences.

::DEVELOPER

Alexandra M. Carvalho

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

RISOTTO

:: MORE INFORMATION

Citation

Alexandra M. Carvalho, Laurent Marsan and Marie-France Sagot,
RISOTTO: Fast extraction of motifs with mismatches
In J. R. Correa, A. Hevia and M. Kiwi, editors, Proceedings of the 7th Latin American Theoretical Informatics Symposium, volume 3887 of Lecture Notes in Computer Science, pages 757-768. Springer-Verlag, 2006.

GRISOTTO – Motif Discovery Tool

GRISOTTO

:: DESCRIPTION

GRISOTTO, uncovers motifs using prior information from a set of co-regulated DNA sequences.

:DEVELOPER

Alexandra M. Carvalho

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/MacOsx/Linux
Java

:: DOWNLOAD

GRISOTTO

:: MORE INFORMATION

Citation

Alexandra M. Carvalho and Arlindo L. Oliveira,
GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge,
Algorithms for Molecular Biology, 6:13, Apr 2011.