MesoRD 1.1 – Mesoscopic Reaction Diffusion Simulator

MesoRD 1.1

:: DESCRIPTION

MesoRD is a tool for stochastic simulation of reactions and diffusion. In particular, it is an implementation of the Next Subvolume Method [3, 4], which is an exact method to simulate the Markov process corresponding to the reaction-diffusion master equation

::DEVELOPER

Johan Hattne, David Fange and Johan Elf

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • C++ Compiler

:: DOWNLOAD

  MesoRD 

:: MORE INFORMATION

Citation:

Johan Hattne, David Fange and Johan Elf (2005)
Stochastic reaction-diffusion simulation with MesoRD
Bioinfomatics 21 (12): 2923-2924.

Diffusion Simulator – Simple Diffusion Random Walk Simulation

Diffusion Simulator

:: DESCRIPTION

Diffusion Simulator is a simple diffusion random walk simulation. Run single trajectories or many. Compute the average distancetraveled in the x and y direction in addition to the Euclidean distance.

::DEVELOPER

PRIDE Converter Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Diffusion Simulator

:: MORE INFORMATION