SplicingCompass 1.0.1
:: DESCRIPTION
SplicingCompass predicts genes that are differentially spliced between two different conditions using RNA-seq data. The software is based on geometric angles between high dimensional read count vectors and is able to predict genes that undergo differential splicing from next generation RNA sequencing data.
::DEVELOPER
the Network Modeling group (Moritz Aschoff, Rainer König) and the HUSAR Bioinformatics Lab(Agnes Hotz-Wagenblatt, Karl-Heinz Glatting)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/Windows/MacOsX
- R package
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 May 1;29(9):1141-8. doi: 10.1093/bioinformatics/btt101. Epub 2013 Feb 28.
SplicingCompass: differential splicing detection using RNA-seq data.
Aschoff M, Hotz-Wagenblatt A, Glatting KH, Fischer M, Eils R, König R.