BDVAL 1.2 – Biomarker Discovery in High-throughput datasets

BDVAL 1.2

:: DESCRIPTION

BDVAL ( Biomarker Discovery and VALidation ) is an open source project for biomarker discovery in high-throughput datasets.

::DEVELOPER

Campagne Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  •  Java

:: DOWNLOAD

 BDVAL

:: MORE INFORMATION

Citation:

Dorff KC, Chambwe N, Srdanovic M, Campagne F.
BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets.
Bioinformatics. 2010 Oct 1;26(19):2472-3. Epub 2010 Aug 11

CLUTO 2.1.2a / gCLUTO 1.0 – Software for Clustering High-Dimensional Datasets

CLUTO 2.1.2a / gCLUTO 1.0

:: DESCRIPTION

CLUTO is a software package for clustering low- and high-dimensional datasets and for analyzing the characteristics of the various clusters. CLUTO is well-suited for clustering data sets arising in many diverse application areas including information retrieval, customer purchasing transactions, web, GIS, science, and biology.

gCLUTO is a cross-platform graphical application for clustering low- and high-dimensional datasets and for analyzing the characteristics of the various clusters.

::DEVELOPER

Karypis Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/ Windows

:: DOWNLOAD

 CLUTO  / gCLUTO

:: MORE INFORMATION

Citation:

Matt Rasmussen and George Karypis.
gCLUTO: An Interactive Clustering, Visualization, and Analysis System.
UMN-CS TR-04-021, 2004.

SIMULATOR 1.0 – Simulate DNA and Protein datasets with well-defined Insertion-deletion dynamics

SIMULATOR 1.0

:: DESCRIPTION

SIMULATOR is a software to simulate DNA and protein datasets with well-defined insertion-deletion dynamics according to a user-given tree.

::DEVELOPER

 the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  SIMULATOR

:: MORE INFORMATION

Citation:

Roland Fleißner (2004) Sequence alignment and phylogenetic inference. Logos Verlag, Berlin.