CpGcluster 2.0
:: DESCRIPTION
CpGcluster is a distance-based algorithm for CpG-island detection.CpGcluster uses only integer arithmetic, thus being a fast and computationally efficient algorithm able to predict statistically significant clusters of CpG dinucleotides. Another outstanding feature is that all predicted CGIs start and end with a CpG dinucleotide, which should be appropriate for a genomic feature whose functionality is based precisely on CpG dinucleotides.
::DEVELOPER
The group of computational genomics and bioinformatics at Granada University (Spain)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Mac OsX/Windows
- Perl
:: DOWNLOAD
:: MORE INFORMATION
Citation
Michael Hackenberg, Christopher Previti, Pedro L Luque-Escamilla, Pedro Carpena, José Martínez-Aroza and José L Oliver
CpGcluster: A distance-based algorithm for CpG-island detection
BMC Bioinformatics 7: 446, 2006