CopyNumber450kCancer 1.0.4
:: DESCRIPTION
CopyNumber450kCancer takes the output of CopyNumber450k and ChAMP packages and correct the baseline in each sample for accurate copy number calling, specially in cancer samples. CopyNumber450kCancer can read the segment output file from CopyNumber450k package directly without any need for modification. Output files from ChAMP need to be in one file not in seperated files.
::DEVELOPER
Molecular Medicine research group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows
- R
:: DOWNLOAD
:: MORE INFORMATION
Citation
CopyNumber450kCancer: Baseline Correction for Accurate Copy Number Calling from the 450k Methylation Array.
Marzouka NA, Nordlund J, Bäcklin CL, Lönnerholm G, Syvänen AC, Almlöf JC.
Bioinformatics. 2015 Nov 9. pii: btv652