PICRUSt2 v2.3.0-b -Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

PICRUSt2 v2.3.0-b

:: DESCRIPTION

PICRUSt is a software for predicting functional abundances based only on marker gene sequences.

::DEVELOPER

PICRUSt2 team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

PICRUSt2

:: MORE INFORMATION

Citation

PICRUSt2: An improved and extensible approach for metagenome inference
Gavin M. Douglas, Vincent J. Maffei, Jesse Zaneveld, Svetlana N. Yurgel, James R. Brown, Christopher M. Taylor, Curtis Huttenhower, Morgan G. I. Langille
doi: https://doi.org/10.1101/672295

Qcut / HQcut – Finding Communities in Biology Networks

Qcut / HQcut

:: DESCRIPTION

Qcut and HQcut (for finding communities in networks). Also includes some scripts for visualizing clustering results, and for constructing and clustering gene co-expression networks

::DEVELOPER

Jianhua Ruan

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  •  MatLab

:: DOWNLOAD

 Qcut / HQcut

:: MORE INFORMATION

Citation

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan;77(1 Pt 2):016104.
Identifying network communities with a high resolution.
Ruan J, Zhang W.