COLONY 2.0.6.7 – Parentage and Sibship Inference from Multilocus Genotype data

COLONY 2.0.6.7

:: DESCRIPTION

COLONY is a Fortran program that implements a maximum likelihood method to assign sibship and parentage jointly, using individual multilocus genotypes at a number of codominant or dominant marker loci.

:: DEVELOPER

Dr Jinliang Wang

:: SCREENSHOTS

:: REQUIREMENTS

Windows / MacOsX

:: DOWNLOAD

COLONY

:: MORE INFORMATION

Citation

Jones, O. and Wang, J. (2009)
COLONY: a program for parentage and sibship inference from multilocus genotype data.
Molecular Ecology Resources 10: 551–555.

Wang, J. (2012)
Computationally efficient sibship and parentage assignment from multilocus marker data.
Genetics 191: 183-194.

CFAssay 1.26.0 – Statistical analysis for the Colony Formation Assay

CFAssay 1.26.0

:: DESCRIPTION

CFAssay provides functions for calculation of linear-quadratic cell survival curves and for ANOVA of experimental 2-way designs along with the colony formation assay.

::DEVELOPER

Herbert Braselmann <braselm at helmholtz-muenchen.de>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/ Linux /MacOsX
R/ Bioconductor

:: DOWNLOAD

CFAssay

:: MORE INFORMATION

Citation

CFAssay: statistical analysis of the colony formation assay.
Braselmann H, Michna A, Heß J, Unger K.
Radiat Oncol. 2015 Nov 4;10(1):223. doi: 10.1186/s13014-015-0529-y.

antaRNA 2.0.1.2 – Ant Colony Optimized RNA Sequence Design

antaRNA 2.0.1.2

:: DESCRIPTION

antaRNA applies the principle of Ant Colony optimization (ACO) to the problem of inverse folding a RNA structure i.e. finding a suitable sequence, which can fold into that structure.

::DEVELOPER

Bioinformatics Group, Albert-Ludwigs-University Freiburg

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python
ViennaRNA Package

:: DOWNLOAD

antaRNA

:: MORE INFORMATION

Citation

antaRNA – Ant Colony Based RNA Sequence Design.
Robert K, Martin M, Rolf B.
Bioinformatics. 2015 May 27. pii: btv319.

COLONY Extractor 1.0 – Extracts COLONY file to ID Linking File

COLONY Extractor 1.0

:: DESCRIPTION

COLONY Extractor is a program that extracts the number and composition of assigned full sibling families along with the most likely genotypes of their respective parents, and a listing of each individual and its assigned family from COLONY (Wang 2004) output files.

::DEVELOPER

Jason Coombs ,jcoombs@cns.umass.edu ,Ben Letcher, and Keith Nislow

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

COLONY Extractor

:: MORE INFORMATION