:: DESCRIPTION
FreeContact is a protein residue contact predictor optimized for speed.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2014 Mar 26;15:85. doi: 10.1186/1471-2105-15-85.
FreeContact: fast and free software for protein contact prediction from residue co-evolution.
Kaján L, Hopf TA, Kalaš M, Marks DS, Rost B
:: DESCRIPTION
CoPAP is a user-friendly web server, which performs accurate inference of coevolving characters as manifested by co-occurring gains and losses.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W232-7. doi: 10.1093/nar/gkt471. Epub 2013 Jun 8.
CoPAP: Coevolution of presence-absence patterns.
Cohen O1, Ashkenazy H, Levy Karin E, Burstein D, Pupko T.
:: DESCRIPTION
PhEVER (Phylogenetic Exploration of Viruses’ Evolutionary Relationships) is a database of homologous gene families providing information for the understanding of virus/host co-evolution. Each family supplies pre-computed alignment and phylogeny.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation:
Nucleic Acids Res. 2011 Jan;39(Database issue):D569-75. doi: 10.1093/nar/gkq1013.
PhEVER: a database for the global exploration of virus-host evolutionary relationships.
Palmeira L, Penel S, Lotteau V, Rabourdin-Combe C, Gautier C.
:: DESCRIPTION
The Mirrortree Server allows to graphically and interactively studying the co-evolution of two protein families, and asses their interactions in an taxonomic context. The server accepts single sequences as input, although expert users can provide their own multiple sequence alignments or trees.
::DEVELOPER
[Computational Systems Biology Group @CNB-CSIC]
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
David Ochoa and Florencio Pazos.
Studying the co-evolution of protein families with the Mirrortree web server.
Bioinformatics (2010) vol. 26 (10) pp. 1370-1