Tag: Closing

FGAP 1.8.1 – Automated Gap Closing tool

FGAP 1.8.1

:: DESCRIPTION

FGAP aims to improve genome sequences by merging alternative assemblies or incorporating alternative data, analyzing the gap region and indicating the best sequence to close the gap.

::DEVELOPER

Vitor C. Piro

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • MatLab

:: DOWNLOAD

 FGAP

:: MORE INFORMATION

Citation

BMC Res Notes. 2014 Jun 18;7:371. doi: 10.1186/1756-0500-7-371.
FGAP: an automated gap closing tool.
Piro VC, Faoro H, Weiss VA, Steffens MB, Pedrosa FO, Souza EM, Raittz RT

GapFiller 2.1.2 – Closing the Gap within Paired Reads

GapFiller 2.1.2

:: DESCRIPTION

GapFiller is not a standard de novo assembler. It aims “only” at closing the gap between pairs of reads as a first step of a large number of downstream analysis

::DEVELOPER

Francesca Nadalin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GapFiller

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012;13 Suppl 14:S8. doi: 10.1186/1471-2105-13-S14-S8. Epub 2012 Sep 7.
GapFiller: a de novo assembly approach to fill the gap within paired reads.
Nadalin F1, Vezzi F, Policriti A.