ClicO FS v2.0.0 – An interactive Web-based service of Circos

ClicO FS v2.0.0

:: DESCRIPTION

ClicO FS  (Circular Interactive Layout Converter Free Services) is an online web-service based on Circos, which provides a user-friendly, interactive web-based interface with configurable features to generate Circos circular plots.

::DEVELOPER

Codon Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

ClicO FS: An interactive web-based service of Circos.
Cheong WH, Tan YC, Yap SJ, Ng KP.
Bioinformatics. 2015 Jul 29. pii: btv433.

BioCircos.js v1.1.1 – Circos JavaScript Library for Biological Data Visualization on Web Applications

BioCircos.js v1.1.1

:: DESCRIPTION

BioCircos.js is an open source interactive Javascript library which provides an easy way to interactive display biological data on the web.

::DEVELOPER

CAS Key Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser
  • Java

:: DOWNLOAD

 BioCircos.js

:: MORE INFORMATION

Citation:

BioCircos.js: an Interactive Circos JavaScript Library for Biological Data Visualization on Web Applications.
Cui Y, Chen X, Luo H, Fan Z, Luo J, He S, Yue H, Zhang P, Chen R.
Bioinformatics. 2016 Jan 27. pii: btw041.

RCircos 1.2.1 – R package for Circos 2D track plots

RCircos 1.2.1

:: DESCRIPTION

RCircos package provides a simple and flexible way to generate Circos 2D track plot images for genomic data visualization. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label.

::DEVELOPER

Hongen Zhang <hzhang at mail.nih.gov>, Sean Davis @NCI

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R package

:: DOWNLOAD

  RCircos

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013 Aug 10;14:244. doi: 10.1186/1471-2105-14-244.
RCircos: an R package for Circos 2D track plots.
Zhang H, Meltzer P, Davis S.

Circos 0.69-9 – Visualize Genome Data and Information in Circular Layout

Circos 0.69-9

:: DESCRIPTION

Circos is a software package for visualizing genome data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.

::DEVELOPER

Canada’s Michael Smith Genome Sciences Centre

:: SCREENSHOTS

 

:: REQUIREMENTS

  • Windows / Linux /
  • Perl

:: DOWNLOAD

 Circos

:: MORE INFORMATION

Citation

Krzywinski, M. et al.
Circos: an Information Aesthetic for Comparative Genomics.
Genome Res (2009) 19:1639-1645

Circoletto 20160709 – Visualize Sequence Similarity with Circos

Circoletto 20160709

:: DESCRIPTION

Circoletto is a rather beautiful way to visualise sequence similarity from BLAST results (which you can either create through Circoletto, or upload your own).

::DEVELOPER

The Bioinformatics Analysis Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • BLAST
  • Circos

:: DOWNLOAD

 Circoletto

:: MORE INFORMATION

Citation:

Bioinformatics. 2010 Oct 15;26(20):2620-1. Epub 2010 Aug 24.
Circoletto: visualizing sequence similarity with Circos.
Darzentas N.

I-PV 1.43 – CIRCOS module for interactive Protein Sequence Visualization

I-PV 1.43

:: DESCRIPTION

I-PV is a software that uses Circos to render interactive images for protein sequence visualization.

::DEVELOPER

Ibrahim Tanyalcin 

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

I-PV: a CIRCOS module for interactive protein sequence visualization.
Tanyalcin I, Al Assaf C, Gheldof A, Stouffs K, Lissens W, Jansen AC.
Bioinformatics. 2015 Oct 10. pii: btv579.