HOODS – Finding Context-specific Neighborhoods of Proteins, Chemicals and Diseases

HOODS

:: DESCRIPTION

HOODS is a simple algorithm which identifies context-specific neighborhoods of entities from a similarity matrix and a list of entities specifying the context.

::DEVELOPER

HOODS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Perl

:: DOWNLOAD

 HOODS

:: MORE INFORMATION

Citation

HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases.
Palleja A, Jensen LJ.
PeerJ. 2015 Jun 30;3:e1057. doi: 10.7717/peerj.1057.

Alkemio 20150517 – Ranking thousands of Chemicals for any topics using Document Categorization

Alkemio 20150517

:: DESCRIPTION

The Alkemio EXPERIMENTAL web server is dedicated to scientists interested to rank chemicals and drugs for a selected biomedical topic. Chemicals and drugs are ranked using a text-minig approach based on chemical-related or drug-related scientific abstracts, similarly to the Génie algorithm.

::DEVELOPER

Computational Biology and Data Mining (CBDM) Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 May 16. pii: gku432.
Alkemio: association of chemicals with biomedical topics by text and data mining.
Gijón-Correas JA1, Andrade-Navarro MA1, Fontaine JF