CCAT – Combinatorial Code Analysis Tool for Transcriptional Regulation

CCAT

:: DESCRIPTION

CCAT is a software package for predicting genome-wide co-binding between biological regulators such as Transcription factors (TFs). The CCAT package also includes accompanying tools to cluster similar Position weight matrix (PWMs) of different TFs into clusters; and search PWMs on multiple genome alignments for conserved motif instances.

::DEVELOPER

Peng Jiang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX

:: DOWNLOAD

 CCAT

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Mar;42(5):2833-47. doi: 10.1093/nar/gkt1302. Epub 2013 Dec 23.
CCAT: Combinatorial Code Analysis Tool for transcriptional regulation.
Jiang P1, Singh M.

CCAT 3.0 – Control based ChIPSeq Analysis Tools

CCAT 3.0

:: DESCRIPTION

CCAT is a software package for the analysis of ChIP-seq data with negative control.

:: DEVELOPER

Sung Wing Kin, Ken

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 CCAT

:: MORE INFORMATION

Citation

A signal-noise model for significance analysis of ChIP-seq with negative control.
Xu H, Handoko L, Wei X, Ye C, Sheng J, Wei CL, Lin F, Sung WK.
Bioinformatics. 2010 May 1;26(9):1199-204