ChopSticks
:: DESCRIPTION
ChopSticks can generate high-resolution deletion calls of homozygous deletions using information independent of other methods, and it is therefore useful to examine the functional impact of SVs or to infer SV generation mechanisms.
::DEVELOPER
Tomohiro Yasuda (tyasuda@hgc.jp)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/windows/MacOsX
- C compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2012 Oct 30;13:279. doi: 10.1186/1471-2105-13-279.
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.
Yasuda T, Suzuki S, Nagasaki M, Miyano S.