LDExplorer 1.0.3 – Whole-genome LD-based Haplotype Block Recognition

LDExplorer 1.0.3

:: DESCRIPTION

LDExplorer is an R package for the memory efficient whole-genome LD-based haplotype block recognition.

::DEVELOPER

the Center of Biomedicine (CBM) at EURAC research.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • R package 

:: DOWNLOAD

LDExplorer

:: MORE INFORMATION

blockbuster – Detect Blocks of Overlapping Reads

blockbuster

:: DESCRIPTION

The blockbuster tool automatically assigns reads to blocks and gives a unique chance to actually see the different origins where the short reads come from.

::DEVELOPER

the Hoffmann Junior Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 blockbuster

:: MORE INFORMATION

Citation

Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovitch P, Stadler PF:
Evidence for Human microRNA-Offset RNAs in Small RNA Sequencing Data“,
Bioinformatics (2009) vol. 25 (18) pp. 2298-301