FEATURE 3.1 – Examine Biological Structures

FEATURE 3.1

:: DESCRIPTION

FEATURE is an automated tools that examines biological structures and produces useful representations of the key biophysical and biochemical features of these structures that are critical for understanding function. The utility of this system extends from medical/pharmaceutical applications (model-based drug design, comparing pharmacological activities) to industrial applications (understanding structural stability, protein engineering).

::DEVELOPER

FEATURE Team

:: SCREENSHOTS

 

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX

:: DOWNLOAD

 FEATURE

:: MORE INFORMATION

Citation:

Halperin I, Glazer DS, Wu S, Altman RB.
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications.”
BMC Genomics. 9 Suppl 2 S2.

Bio3D v2.3 / Bio3D-web – Biological Structure Analysis

Bio3D v2.3 / Bio3D-web

:: DESCRIPTION

Bio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data.

Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families.

::DEVELOPER

The Grant Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

 Bio3D

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Dec 10;15(1):399.
Integrating protein structural dynamics and evolutionary analysis with Bio3D.
Skjærven L, Yao XQ, Scarabelli G, Grant BJ.