openBIS 19.06.0/ openBIS ELN-LIMS – Managing Biological Information

openBIS 19.06.0 / openBIS ELN-LIMS

:: DESCRIPTION

openBIS is an open, distributed system for managing biological information. The main goal is to support biological research data workflows from the source (i.e. the measurement instruments) to facilitate the process of answering biological questions by means of cross-domain queries against raw data, processed data, knowledge resources and its corresponding metadata.

The aim of openBIS ELN-LIMS was to create a stable database with an intuitive and simple-to-use graphical user interface (GUI) where all relevant lab data can be collected.

::DEVELOPER

The Center for Information Sciences and Databases (CISD)

:: SCREENSHOTS

n/a

::REQUIREMENTS

  • Linux / Solaris / MacOS X
  • JRE
  • PostgreSQL

:: DOWNLOAD

  openBIS , openBIS ELN-LIMS

:: MORE INFORMATION

Citation

openBIS ELN-LIMS: an open-source database for academic laboratories.
Barillari C, Ottoz D, Fuentes-Serna JM, Ramakrishnan C, Rinn B, Rudolf F.
Bioinformatics. 2015 Oct 27. pii: btv606

BMC Bioinformatics. 2011 Dec 8;12:468. doi: 10.1186/1471-2105-12-468.
openBIS: a flexible framework for managing and analyzing complex data in biology research.
Bauch A, Adamczyk I, Buczek P, Elmer FJ, Enimanev K, Glyzewski P, Kohler M, Pylak T, Quandt A, Ramakrishnan C, Beisel C, Malmstr?m L, Aebersold R, Rinn B

GeneNotes 1.0 – FireFox Extension of Collecting and Managing Biological Information

GeneNotes 1.0

:: DESCRIPTION

GeneNotes extension is a gene-oriented tool and is developed to help biologists collect and manage a variety of biological information as notes from the Internet. It greatly helps biologists during the decision making processes in large-scale functional genomics studies.

::DEVELOPER

Pengyu Hong

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 GeneNotes

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2005 Feb 1;6:20.
GeneNotes–a novel information management software for biologists.
Hong P, Wong WH.

CARGO 2.0 – Web Portal to Integrate Biological Information

CARGO 2.0

:: DESCRIPTION

CARGO (Cancer And Related Genes Online) is a configurable biological web portal designed as a tool to facilitate, integrate and visualize results from Internet resources, independently of their native format or access method. The tool is designed to be used by experimental biologists with no training in bioinformatics. In the current state, the system presents a list of human cancer genes.

::DEVELOPER

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO)

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 CARGO

:: MORE INFORMATION

Citation:

Cases I, Pisano DG, Andres E, Carro A, Fernández JM, Gómez-López G, Rodriguez JM, Vera JF, Valencia A, Rojas AM.
CARGO: a web portal to integrate customized biological information.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W16-20. Epub 2007 May 5.