Tag: Biochemical Reaction Networks

CRNreals v2 – Distinguishability Analysis of Biochemical Reaction Networks

CRNreals v2

:: DESCRIPTION

CRNreals is a toolbox for distinguishability and identifiability analysis of biochemical reaction networks.

::DEVELOPER

(Bio)Process Engineering group, IIM-CSIC

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows
  • Matlab

:: DOWNLOAD

 CRNreals

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Jun 1;28(11):1549-50. doi: 10.1093/bioinformatics/bts171. Epub 2012 Apr 6.
CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks.
Szederkényi G1, Banga JR, Alonso AA.

HSimulator 1.0 – Multithread Hybrid stochastic/deterministic simulation of Biochemical Reaction Networks

HSimulator 1.0

:: DESCRIPTION

HSimulator is an optimized, multithread Java simulator compatible with Java 6.0 or higher versions. The simulator works both in terminal and in a graphical environment thanks to an ad hoc GUI.

::DEVELOPER

The Microsoft Research – University of Trento Centre for Computational and Systems Biology

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • JRE

:: DOWNLOAD

HSimulator

:: MORE INFORMATION

Citation

L. Marchetti, R. Lombardo, C. Priami.
HSimulator: Hybrid Stochastic/Deterministic Simulation of Biochemical Reaction Networks, Complexity, Volume 2017, Article ID 1232868, DOI: 10.1155/2017/1232868, 2017.