iRep v1.10 – Estimating Bacteria Replication Rates based on Population Genome Copy Number Variation

iRep v1.10

:: DESCRIPTION

iRep is a method for determining replication rates for bacteria from single time point metagenomics sequencing and draft-quality genomes.

::DEVELOPER

Banfield Lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux/windows /MacOsX
  • Python

:: DOWNLOAD

iRep

:: MORE INFORMATION

Citation

Brown CT, Olm MR, Thomas BC, Banfield JF.
Measurement of bacterial replication rates in microbial communities.
Nat Biotechnol. 2016 Dec;34(12):1256-1263. doi: 10.1038/nbt.3704. Epub 2016 Nov 7. PMID: 27819664; PMCID: PMC5538567.