ASSIGN 1.6.0 – Adaptive Profiling of Genomic Signatures

ASSIGN 1.6.0

:: DESCRIPTION

ASSIGN (Adaptive Signature Selection and InteGratioN) is a computational tool to evaluate the pathway deregulation/activation status in individual patient samples.

::DEVELOPER

 Johnson lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows/ MacOsX
  • R
  • BioConductor

:: DOWNLOAD

ASSIGN

:: MORE INFORMATION

Citation

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.
Shen Y, Rahman M, Piccolo SR, Gusenleitner D, El-Chaar NN, Cheng L, Monti S, Bild AH, Johnson WE.
Bioinformatics. 2015 Jun 1;31(11):1745-53. doi: 10.1093/bioinformatics/btv031.

AnDom – Assign Structual Domains to Protein Sequences

AnDom

:: DESCRIPTION

AnDom (Annotation of Domains)is a WEB tool helps to assign structual domains to protein sequences and to classify them according to SCOP.

::DEVELOPER

Bork Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

J Chem Inf Comput Sci. 2002 Mar-Apr;42(2):405-7.
A versatile structural domain analysis server using profile weight matrices.
Schmidt S, Bork P, Dandekar T.