Tag: Annotated Modules

eXamine 2.1.2 – Cytoscape app for Exploring Annotated Modules in Nnetworks

eXamine 2.1.2

:: DESCRIPTION

eXamine is a set-oriented visual analysis approach for annotated modules that displays set membership as contours on top of a node-link layout. eXamine extends upon Self Organizing Maps to simultaneously lay out nodes, links, and set contours.

::DEVELOPER

Centrum Wiskunde & Informatica (CWI)

:: SCREENSHOTS

eXamine

:: REQUIREMENTS

  • Linux/MacOsX/Windows
  • Java
  • Cytoscape

:: DOWNLOAD

 eXamine

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Jul 10;15:201. doi: 10.1186/1471-2105-15-201.
eXamine: exploring annotated modules in networks.
Dinkla K, El-Kebir M, Bucur CI, Siderius M, Smit MJ, Westenberg MA1, Klau GW.