KAPPA 1.1 – Key Amino acid Pattern-based Protein Analyzer

KAPPA 1.1

:: DESCRIPTION

KAPPA is a sequence search program dedicated to the discovery and clustering of proteins defined by a key aminoacid pattern.

::DEVELOPER

KAPPA team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

  KAPPA

:: MORE INFORMATION

Citation

Bioinformatics. 2015 Jan 31. pii: btv047.
KAPPA, a simple algorithm for discovery and clustering of proteins defined by a key amino acid pattern: a case study of the cysteine-rich proteins.
Joly V, Matton DP

VICMpred – Prediction of Functional Proteins of Gram-negative Bacteria using Amino Acid Patterns and Composition

VICMpred

:: DESCRIPTION

VICMpred aids in broad functional classification of bacterial proteins into virulence factors, information molecule, cellular process and metabolism molecule.

::DEVELOPER

VICMpred Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Saha, S. and Raghava, G.P.S. (2006)
VICMpred: SVM-based method for the prediction of functional proteins of gram-negative bacteria using amino acid patterns and composition.
Genomics Proteomics & Bioinformatics. 4(1):42-7