Tag: Alignment Viewer

Gambit 0.4.145 – Graphical BAM Alignment Viewer

Gambit 0.4.145

:: DESCRIPTION

Gambit is a new cross-platform GUI (graphical user interface) application for sequence visualization and analysis.The software takes advantage of the indexing features of the (fairly) recently standardized BAM sequence alignment format that allows rapid access to genomic data, with minimal startup time and re-rendering delay. Gambit also supports a variety of annotation formats (BED, GFF, GFF3, VCF) “out-of-the-box” for displaying gene/region annotations as well as SNP entries.

::DEVELOPER

The MarthLab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/windows/MacOsX

:: DOWNLOAD

 Gambit

:: MORE INFORMATION

MGAviewer 1.3.0 – MetaGenomic Alignment Viewer

MGAviewer 1.3.0

:: DESCRIPTION

MGAviewer is a graphic interface for visualization of alignment results between metagenomic samples and reference microbial genomes.

::DEVELOPER

Group of Weizhong Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 MGAviewer

:: MORE INFORMATION

Maqview 0.2.5 – Graphical Read Alignment Viewer

Maqview 0.2.5

:: DESCRIPTION

Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.

::DEVELOPER

Maqview Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/MacOsX

:: DOWNLOAD

 Maqview

:: MORE INFORMATION