USeq 9.2.3

:: DESCRIPTION

USeq is a collection of software tools for for both low and high level analysis of next generation, ultra high throughput signature sequencing data from the Solexa, SOLiD, and 454 platforms. Initial emphasis: chIP-seq and RNA-Seq with FDR estimations.

::DEVELOPER

Huntsman Cancer Institute in the Utah Bioinformatics Shared Resource Center.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux / Windows / MacOsX
• R package
• Java

:: DOWNLOAD

 USeq

:: MORE INFORMATION

Citation:

Nix DA, Courdy SJ, Boucher KM:
Empirical methods for controlling false positives and estimating confidence in chIP-seq peaks.
BMC Bioinformatics. 2008 Dec 5;9(1):523.