SPONGE 1.8.0 – Sparse Partial Correlations On Gene Expression

SPONGE 1.8.0

:: DESCRIPTION

SPONGE provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input.

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::DEVELOPER

Baumbach lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R
  • Bioconductor

:: DOWNLOAD

SPONGE

:: MORE INFORMATION

Citation

Bioinformatics. 2019 Jul 15;35(14):i596-i604. doi: 10.1093/bioinformatics/btz314.
Large-scale inference of competing endogenous RNA networks with sparse partial correlation.
List M, Dehghani Amirabad A, Kostka D, Schulz MH

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