SNAP 1.1.1
:: DESCRIPTION
SNAP calculates synonymous and non-synonymous substitution rates based on a set of codon-aligned nucleotide sequences. It outputs a synonymous and a non-synonymous distance matrix, an exhaustive pairwise codon-by-codon comparison, and a summary table.
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::DEVELOPER
Bette Korber at Los Alamos National Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/ MacOsX/Windows
- perl
:: DOWNLOAD
:: MORE INFORMATION
Citation
Korber B. (2000)
HIV Signature and Sequence Variation Analysis.
Computational Analysis of HIV Molecular Sequences, Chapter 4, pages 55-72.
Allen G. Rodrigo and Gerald H. Learn, eds. Dordrecht, Netherlands: Kluwer Academic Publishers.