SLiQ
:: DESCRIPTION
SLIQ , a set of simple linear inequalities derived from the geometry of contigs on the line, can be used to predict the relative positions and orientations of contigs from individual mate pair reads and thus produce a contig digraph.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/Mac OsX / Windows
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
SLIQ: simple linear inequalities for efficient contig scaffolding.
Roy RS, Chen KC, Sengupta AM, Schliep A.
J Comput Biol. 2012 Oct;19(10):1162-75.