Serial NetEvolve 1.0
:: DESCRIPTION
Serial NetEvolve is a modification of the Treevolve program in which serially sampled sequences are evolved along a randomly generated coalescent tree or network (Grassly et al. 1999; Hudson 1983; Kingman 1982) . Treevolve offers a variety of evolutionary model and population parameters including a rate of recombination and as such it was chosen over other programs to be adapted for the simulation of serially sampled data. The new features include the choice of either a clock-like model of evolution or a variable rate of evolution, simulation of serial samples and the output of the randomly generated tree or network in Newick format or in our newly formulated NeTwick format.
::DEVELOPER
Bioinformatics Research Group (BioRG)
:: SCREENSHOTS
:: REQUIREMENTS
- Linux / Windows / MacOsX
- C Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2006 Sep 15;22(18):2313-4. Epub 2006 Jul 14.
Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network.
Buendia P, Narasimhan G.