RTFBSDB 0.31

:: DESCRIPTION

RTFBSDB is a unified framework that integrates a database of more than 65,000 TF binding motifs with tools to easily and efficiently scan target genome sequences. Rtfbsdb clusters motifs with similar DNA sequence specificities and optionally integrates RNA-seq or PRO-seq data to restrict analyses to motifs recognized by TFs expressed in the cell type of interest.

::DEVELOPER

Danko Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Windows/ Linux / MacOsX
• R

:: DOWNLOAD

RTFBSDB

:: MORE INFORMATION

Citation

Wang Z, Martins AL, Danko CG.
RTFBSDB: an integrated framework for transcription factor binding site analysis.
Bioinformatics. 2016 Oct 1;32(19):3024-6. doi: 10.1093/bioinformatics/btw338. Epub 2016 Jun 10. PMID: 27288497; PMCID: PMC5039921.