RIPPLE

:: DESCRIPTION

RIPPLE is a software tool to predict enhancer-promoter interactions. RIPPLE is based random forests classification that trains a binary classifier for interactions inferred from Hi-C or 5C data.

::DEVELOPER

Roy Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux

:: DOWNLOAD

RIPPLE

:: MORE INFORMATION

Citation

Roy S, Siahpirani AF, Chasman D, Knaack S, Ay F, Stewart R, Wilson M, Sridharan R.
A predictive modeling approach for cell line-specific long-range regulatory interactions.
Nucleic Acids Res. 2015 Oct 15;43(18):8694-712. doi: 10.1093/nar/gkv865. Epub 2015 Sep 3. Erratum in: Nucleic Acids Res. 2016 Feb 29;44(4):1977-8. PMID: 26338778; PMCID: PMC4605315.