Rascaf v1.0.2

:: DESCRIPTION

Rascaf (RnA-seq SCAFfolder) uses continuity and order information from paired-end RNA-seq reads to improve a draft assembly, particularly in the gene regions. It takes as input an assembly and one or several RNA-seq data sets aligned to the genome, and recruits additional contigs into the assembly, potentially adjusting some scaffolds to better fit the data and to create longer gene models.

::DEVELOPER

Li Song

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• MacOsx/Linux

:: DOWNLOAD

Rascaf

:: MORE INFORMATION

Citation

Song L, Shankar DS, Florea L.
Rascaf: Improving Genome Assembly with RNA Sequencing Data.
Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.03.0027. PMID: 27902792.