probA 0.1.1

:: DESCRIPTION

probA – calculates the partiton function of a pairwise global alignment. The partition function is then used to compute the probability of every possible match (or mismatch) between the two sequences. The partition function is also employed for stochastic backtracking which generates a correctly weighted ensemble of optimal and suboptimal alignments.

::DEVELOPER

Ulli Mückstein

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux

:: DOWNLOAD

 probA 

:: MORE INFORMATION

Citation

Bioinformatics. 2002;18 Suppl 2:S153-60.
Stochastic pairwise alignments.
Mückstein U, Hofacker IL, Stadler PF.