PhyloSNP
:: DESCRIPTION
PhyloSNP is designed to take SNP data files (.csv and .vcf) and generate phylogenetic trees from the provided data. Additionally, PhyloSNP can either generate a shortened concatenated genome from the SNPs or generate a concatenated genome from contigs generated from the SNPs and a specified number of base pairs around each SNP.
::DEVELOPER
High-performance Integrated Virtual Environment (HIVE)
:: SCREENSHOTS
:: REQUIREMENTS
- Linux / Windows
- Perl
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genomics. 2014 Jul;104(1):1-7. doi: 10.1016/j.ygeno.2014.06.001. Epub 2014 Jun 12.
Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.
Faison WJ, Rostovtsev A, Castro-Nallar E, Crandall KA, Chumakov K, Simonyan V, Mazumder R