Phyla_AMPHORA – Phylum-specific Automated Phylogenomic Inference Pipeline for Bacterial Sequences

Phyla_AMPHORA

:: DESCRIPTION

Phyla_AMPHORA is a flavor of AMPHOR2 that performs large-scale phylogenetic inference using phylum-specific bacterial phylogenetic markers. The current version contains a total of 7542 marker genes from 20 bacterial phyla. With the vastly expanded phylogenetic marker database, Phyla_AMPHORA increases the robustness of the genome trees as well as the power of metagenomic phylotyping.

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::DEVELOPER

Wu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

  Phyla_AMPHORA

:: MORE INFORMATION

Citation

Mol Biol Evol. 2013 Jun;30(6):1258-62. doi: 10.1093/molbev/mst059. Epub 2013 Mar 21.
A phylum-level bacterial phylogenetic marker database.
Wang Z1, Wu M.