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PhosphoLogo – Calculate Position-specific Amino Acid Preferences and Anti-preferences

PhosphoLogo

:: DESCRIPTION

PhosphoLogo is a tool for generating information-based sequence logos from a list of equal-length peptide sequences centered on the phosphorylated residues. It has been designed to meet the needs of analyzing protein kinase phospho-motifs, but can be used for other modifications or unmodified peptides.

::DEVELOPER

Epithelial Systems Biology Laboratory

:: SCREENSHOTS

PhosphoLogo

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • JRE

:: DOWNLOAD

PhosphoLogo

:: MORE INFORMATION

Citation

Am J Physiol Cell Physiol. 2012 Oct 1;303(7):C715-27. doi: 10.1152/ajpcell.00166.2012. Epub 2012 Jun 20.
Identifying protein kinase target preferences using mass spectrometry.
Douglass J1, Gunaratne R, Bradford D, Saeed F, Hoffert JD, Steinbach PJ, Knepper MA, Pisitkun T.

Posted on 2016/01/292016/01/29Author adminCategories proteomicsTags Amino Acid Preference, Anti-preference, PhosphoLogo

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